WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00086999 Genotype  eri-1(mg366)
Phenotype Remark  Adult worms exhibited breaks in their alae Remark  Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation. If Ahringer clone not available, Vidal laboratory clone used for curation.. Figure 1 names the targeted sequence as F56B3.4 and the locus as skr-18 (which has sequence name F56B3.12 as of WS227); used skr-18/F56B3.12 for curation
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004824 F56B3.4 F56B3.4 Caenorhabditis elegans
WBGene00018935 skr-18 F56B3.12 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56B3.4b F56B3.4b 1563   IV: 786455-786479
CDS:F56B3.4a F56B3.4a 1899   IV: 786324-786479
CDS:F56B3.12 F56B3.12 552   IV: 794752-795259

1 Laboratories

Primary Identifier
GR

2 Phenotype

Identifier Name Description
WBPhenotype:0000280 breaks in alae The small linear ridges running along the lateral lines of the cuticle, lengthwise along the body, contain gaps as opposed to a continuous arrangement (Wormatlas).
WBPhenotype:0000038 exploded through vulva The animal is ruptured at the vulva and displays an extrusion of internal organs at the site of rupture.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00031224

0 Strain