WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00097022 Phenotype Remark  cst-1/2 RNAi resulted in a shortened life span as well as an early-onset, age-associated decline in movement and pharyngeal pumping
Remark  (Figure 6D-F, Table S2) cst-1/cst-2 RNAi (dsRNA targets both genes)

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016038 cst-2 C24A8.4 Caenorhabditis elegans
WBGene00017472 cst-1 F14H12.4 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C24A8.4 C24A8.4 1266   X: 4333192-4333346
CDS:F14H12.4a F14H12.4a 1488   X: 4339644-4339693
CDS:F14H12.4b F14H12.4b 1494   X: 4339644-4339693

1 Laboratories

Primary Identifier
LD

3 Phenotype

Identifier Name Description
WBPhenotype:0000019 pharyngeal pumping reduced Pharyngeal pumping motion occurs at a slower rate than control animals.
WBPhenotype:0001171 shortened life span The duration of viability in the adult phase of the life-cycle is less than that of control animals.
WBPhenotype:0001213 locomotion reduced Animals exhibit a decrease in any parameter used to measure locomotion compared to control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00027662

1 Strain

WormBase ID
WBStrain00000001