WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00097410 Phenotype Remark  ifg-1 RNAi using construct C3 resulted in few late stage oocytes and few embryos. All ifg-1(RNAi) worms displayed marked deterioration in the proximal gonad.
Remark  (Figure 4b, 4c) ifg-1 RNAi (construct C3)

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002066 ifg-1 M110.4 Caenorhabditis elegans

5 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M110.4b M110.4b 3468   II: 8217254-8217302
CDS:M110.4d M110.4d 3480   II: 8217254-8217302
CDS:M110.4e M110.4e 3483   II: 8217254-8217302
CDS:M110.4a M110.4a 3471   II: 8217254-8217302
CDS:M110.4c M110.4c 3129   II: 8217839-8218837

1 Laboratories

Primary Identifier
KX

4 Phenotype

Identifier Name Description
WBPhenotype:0000154 reduced brood size The characteristic number of offspring produced is lower compared to that of control animals.
WBPhenotype:0000229 small Animals are shorter and thinner than control animals at the same developmental stage.
WBPhenotype:0001944 oocyte number decreased A decreased number of celullarized haploid female germ cells (oocytes) are present in the gonad compared to control.
WBPhenotype:0001958 gonad degenerate Animals contain a gonad that initially functioned, but subsequently stopped. In hermaphrodites or females there is often the presence old embryos and/or hatched larva, but no young embryos, in the uterus.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00031847

0 Strain