WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00087001 Genotype  col-19::GFP; let-7(mg279)
Phenotype Remark  Worms exhibited a disrupted col-19::GFP expression pattern Remark  Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation. If Ahringer clone not available, Vidal laboratory clone used for curation.. Figure 1 names the targeted sequence as F56B3.4 and the locus as skr-18 (which has sequence name F56B3.12 as of WS227); used skr-18/F56B3.12 for curation

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004824 F56B3.4 F56B3.4 Caenorhabditis elegans
WBGene00018935 skr-18 F56B3.12 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56B3.4b F56B3.4b 1563   IV: 786455-786479
CDS:F56B3.4a F56B3.4a 1899   IV: 786324-786479
CDS:F56B3.12 F56B3.12 552   IV: 794752-795259

1 Laboratories

Primary Identifier
GR

1 Phenotype

Identifier Name Description
WBPhenotype:0000306 transgene expression variant Any variation in the characteristic expression of a gene product produced by exogenous DNA that has been introduced into the organism compared to control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00031224

0 Strain