WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00112557 Phenotype Remark  Decreased susceptibility to Mycobacterium smegmatis and Mycobacterium marinum exposure compared to wild-type C. elegans. Significantly lower mortality when exposed to pathogenic M. marinum, compared to wild-type C. elegans (Supplemental Figure 15). Involved in C. elegans innate immune response against mycobacteria.
Remark  vhp-1 (WBGene00006923) RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006923 vhp-1 F08B1.1 Caenorhabditis elegans

6 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F08B1.1e F08B1.1e 1986   II: 5323276-5323284
CDS:F08B1.1d F08B1.1d 1761   II: 5334558-5334649
CDS:F08B1.1f F08B1.1f 1509   II: 5338228-5338356
CDS:F08B1.1g F08B1.1g 1347   II: 5338773-5339014
CDS:F08B1.1a F08B1.1a 1974   II: 5331489-5331671
CDS:F08B1.1b F08B1.1b 1821   II: 5336307-5336562

0 Laboratories

1 Phenotype

Identifier Name Description
WBPhenotype:0001014 pathogen resistance increased Animals are less prone to infection compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00049281

0 Strain