WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00088410 Genotype  oma-1(zu405)
Phenotype Remark  RNAi of skn-1 in zu405 embryos results in embryos without any pharyngeal tissues. Approximately 30% (n > 200) of the RNAi embryos still produce intestinal tissues. Remark  paper remark: Exact sequence used for RNAi not stated by authors, spliced coding region sequence of gene used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004804 skn-1 T19E7.2 Caenorhabditis elegans

4 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T19E7.2d T19E7.2d 672   IV: 5651764-5651840
CDS:T19E7.2c T19E7.2c 1602   IV: 5651764-5651840
CDS:T19E7.2a T19E7.2a 1872   IV: 5651764-5651840
CDS:T19E7.2b T19E7.2b 933   IV: 5651764-5651840

1 Laboratories

Primary Identifier
TX

2 Phenotype

Identifier Name Description
WBPhenotype:0001646 no pharynx Embryos fail to generate cells that exhibit pharyngeal specification.
WBPhenotype:0001637 no Intestine Embryos fail to generate cells that exhibit intestinal specification. In C. elegans, the E blastomere is the precursor of all the intestinal cells.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00005930

0 Strain