WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00065105 Genotype  glp-4(bn2);rrf-3(pk1426)
Remark  To avoid confounding effects of progeny in killing assays, used sterile strain glp-4(bn2);rrf-3(pk1426), which lacks the germline altogether (glp-4) and is more sensitive to RNAi (rrf-3). Pseudomonas aeruginosa strain used was the clinical isolate PA14.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

3 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000751 col-178 C34F6.2 Caenorhabditis elegans
WBGene00000752 col-179 C34F6.3 Caenorhabditis elegans
WBGene00007945 C34F6.11 C34F6.11 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C34F6.11 C34F6.11 648   X: 11202579-11202661
CDS:C34F6.2 C34F6.2 852   X: 11199476-11199533
CDS:C34F6.3 C34F6.3 852   X: 11201539-11201729

1 Laboratories

Primary Identifier
WE

1 Phenotype

Identifier Name Description
WBPhenotype:0001013 pathogen susceptibility increased Animals are more prone to infection compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00028482

0 Strain