WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00077562 Phenotype Remark  30 percent relative decrease in top-1 exon inclusion in hrpf-1 RNAi embryos relative to a control RNAi
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020936 hrpf-1 W02D3.11 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W02D3.11a W02D3.11a 1650   I: 6753382-6753655
CDS:W02D3.11b W02D3.11b 1089   I: 6753763-6753802

1 Laboratories

Primary Identifier
SZ

1 Phenotype

Identifier Name Description
WBPhenotype:0001807 alternative splicing variant Any variation in the process of generating multiple mRNA molecules from a given set of exons by differential use of exons from the primary transcript(s) to form multiple mature mRNAs that vary in their exon composition compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00031852

0 Strain