WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00082726 Phenotype Remark  86% of pie-1;spn-4 double RNAi embryos lacked pharynx, as indicated by lack of expression of the ceh-22::gfp transgene
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004027 pie-1 Y49E10.14 Caenorhabditis elegans
WBGene00004984 spn-4 ZC404.8 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y49E10.14b Y49E10.14b 375   III: 12428713-12429087
CDS:Y49E10.14a Y49E10.14a 1008   III: 12426893-12427177
CDS:ZC404.8 ZC404.8 1056   V: 6783653-6783774

1 Laboratories

Primary Identifier
EU

2 Phenotype

Identifier Name Description
WBPhenotype:0001375 transgene expression undetectable The expression of a gene product produced by DNA coded for by exogenous genetic material that has been introduced into the organism is reduced below the threshold of detection.
WBPhenotype:0001646 no pharynx Embryos fail to generate cells that exhibit pharyngeal specification.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00004995

1 Strain

WormBase ID
WBStrain00029938