WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00101298 Genotype  rrf-3(pk1426); him-8(e1489); POPTOP (POP-1 and TCF Optimal Promoter) consisting of (7x POP-1 binding sites)::(pes-10 minimal promoter)::mCherry [as a Wnt/Beta-catenin pathway activity reporter]
Phenotype Remark  sys-1 RNAi resulted in reduced numbers of POPTOP mCherry-positive cells in the male gonad, compared to control Remark  (Figure 5B) sys-1 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006379 sys-1 T23D8.9 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T23D8.9a T23D8.9a 2436   I: 9980494-9980576
CDS:T23D8.9b T23D8.9b 720   I: 9982656-9982683
CDS:T23D8.9c T23D8.9c 2037   I: 9980494-9980576

1 Laboratories

Primary Identifier
DZ

1 Phenotype

Identifier Name Description
WBPhenotype:0001279 transgene expression reduced male Any decrease in the intensity of expression of a gene product produced by exogenous DNA, exclusively in the male, that has been introduced into the organism compared to its expression in control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00036019

0 Strain