WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00098546 Phenotype Remark  chc-1 RNAi disrupted acidification of germ cell corpses, as indicated by a lack of staining by the LysoSensor Green DND-189 acidification sensor, suggesting a defect in phagosome maturation
Remark  (Figure 5A) chc-1 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011867 chc-1 T20G5.1 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T20G5.1 T20G5.1 5046   III: 10203872-10203994

1 Laboratories

Primary Identifier
FU

2 Phenotype

Identifier Name Description
WBPhenotype:0001846 phagosome maturation defective Early phagosomes fail to undergo the maturation process following the ingestion of particulate material by phagocytosis; During maturation, phagosomes acquire markers of late endosomes and lysosomes.
WBPhenotype:0001394 cell acidification defective Animals lack the capacity to reduce the internal pH of a cell.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00042428

0 Strain