WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00092409 Remark  (Figure S2b, 3e) tfg-1 RNAi. Authors report testing three different dsRNA sequences to knockdown tfg-1 and all produced similar results. One selected for curation.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006565 tfg-1 Y63D3A.5 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y63D3A.5 Y63D3A.5 1461   I: 14102047-14102227

1 Laboratories

Primary Identifier
MSN

0 Phenotype

2 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0001403 antibody subcellular localization variant Any variation in the placement of a protein, as detected by antibody staining, within in a cell or cellular compartment compared to control.
WBPhenotype:0001880 endoplasmic reticulum morphology variant Any variation in the form, structure or composition of the endoplasmic reticulum compared to control. The endoplasmic reticulum (ER) is an irregular network of membranes, that occurs in the cytoplasm, and forms a complex meshwork of tubular channels. The ER has two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00038310

0 Strain