WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00110084 Phenotype Remark  "The UPRmt was induced by allowing worms to develop on spg-7(RNAi) for two days before pathogen exposure. UPRmt pre-activation dramatically reduced the intestinal accumulation of P. aeruginosa expressing GFP (P. aeruginosa-GFP (Fig. 3c, d))."
Remark  (Fig. 3c, d, Extended Data Figure 5d,e) spg-7 RNAi
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

3 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004978 spg-7 Y47G6A.10 Caenorhabditis elegans
WBGene00220165 Y47G6A.36 Y47G6A.36 Caenorhabditis elegans
WBGene00021641 Y47G6A.15 Y47G6A.15 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47G6A.15 Y47G6A.15 837   I: 3473075-3473194
CDS:Y47G6A.10 Y47G6A.10 2349   I: 3467134-3467253

0 Laboratories

1 Phenotype

Identifier Name Description
WBPhenotype:0001866 reduced pathogen accumulation Animals exhibit a reduction in pathogen accumulation, persistent colonization, and luminal distension of the intestine.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00045829

0 Strain