WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00097823 Phenotype Remark  RNAi results in increased numbers of germline cell corpses, but a reduced percentage of germline corpses that have been acidified, as determined by acridine orange staining
Remark  (Figure S1, Table S1b) vps-39 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011625 vps-39 T08G5.5 Caenorhabditis elegans

4 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08G5.5b T08G5.5b 2781   V: 14034593-14034805
CDS:T08G5.5c T08G5.5c 2763   V: 14034593-14034805
CDS:T08G5.5a T08G5.5a 2772   V: 14034593-14034805
CDS:T08G5.5d T08G5.5d 2772   V: 14034593-14034805

0 Laboratories

2 Phenotype

Identifier Name Description
WBPhenotype:0001180 accumulated germline cell corpses Animals exhibit an increase in the quantity of germ line cells that have undergone programmed cell death but have not been engulfed.
WBPhenotype:0001394 cell acidification defective Animals lack the capacity to reduce the internal pH of a cell.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00036059

0 Strain