WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00082137 Genotype  msh-5(me23)
Phenotype Remark  Small spots with DAPI stain show DNA fragmentation when rad-51 RNAi is done in the msh-5(me23). This phenotype is synthetic as it is not seen in either background alone.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004297 rad-51 Y43C5A.6 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y43C5A.6b Y43C5A.6b 1074   IV: 10281976-10282102
CDS:Y43C5A.6c Y43C5A.6c 1089   IV: 10281976-10282102
CDS:Y43C5A.6a Y43C5A.6a 1188   IV: 10281976-10282102

0 Laboratories

2 Phenotype

Identifier Name Description
WBPhenotype:0001233 DAPI staining variant Animals exhibit variations in the pattern of a chemical nuclear stain which is commonly used in fixed specimens and produces a bright blue label, compared to control. DAPI (4'-6-Diamidino-2-phenylindole) forms fluorescent complexes with natural double-stranded DNA (Wormatlas).
WBPhenotype:0001348 chromosome morphology variant Variations in the form or composition of a structure in the cell nucleus which contains the genetic material encoded as DNA and surrounded by histone proteins and other regulatory elements compared to control. In C. elegans the normal cell contains 5 pairs of 'autosomes' and one or two X chromosomes (Wormatlas).

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00005134

0 Strain