WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00077495 Phenotype Remark  112 percent increase in Heparin sulfate. In addition, the disaccharide composition of the heparin sulfate was less sulphated than that of the wildtype worms.
Remark  Authors state that feeding RNAi and soaking RNAi produce the same phenotype.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00005023 sqv-5 T24D1.1 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T24D1.1b T24D1.1b 2205   I: 9948203-9948211
CDS:T24D1.1a T24D1.1a 2181   I: 9949108-9949769
CDS:T24D1.1c T24D1.1c 2211   I: 9948203-9948211

0 Laboratories

1 Phenotype

Identifier Name Description
WBPhenotype:0001698 heparan sulfate biosynthesis variant Animals exhibit variations in the chemical reactions and pathways resulting in the formation of the heparan sulfate proteoglycan compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00005868

0 Strain