WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00099086 Genotype  ipla-1(xh13); sid-1(qt2); xhEx2045[scm::tat-5 RNAi]
Phenotype Remark  Seam cell specific tat-5 RNAi suppressed the aberrant seam cell alignment phenotype of the ipla-1(xh13) mutation Remark  (Table 1) seam cell specific tat-5 RNAi. Exact sequence used for RNAi not stated by authors, spliced coding region sequence of gene used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009498 tat-5 F36H2.1 Caenorhabditis elegans

4 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F36H2.1a F36H2.1a 3225   I: 9234678-9234866
CDS:F36H2.1c F36H2.1c 3216   I: 9234678-9234866
CDS:F36H2.1d F36H2.1d 3180   I: 9234678-9234866
CDS:F36H2.1b F36H2.1b 3171   I: 9234678-9234866

0 Laboratories

1 Phenotype

Identifier Name Description
WBPhenotype:0002176 seam cell morphology variant Animals exhibit variations in the structure, organization or placement of the population of the lateral, alae-producing epithelial cells (seam cells), compared to that observed in control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00031898

0 Strain