WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00061179 Genotype  jcIs1[ajm-1::gfp; unc-29(+); rol-6(su1006)]; rrf-3(pk1426)
Phenotype Remark  Acquired disorganized and aberrant shapes in hypodermal cells. Remark  Endomitotic oocytes (Emo)

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006498 ten-1 R13F6.4 Caenorhabditis elegans

4 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R13F6.4a R13F6.4a 7509   III: 6838544-6838706
CDS:R13F6.4d R13F6.4d 8055   III: 6830457-6830470
CDS:R13F6.4e R13F6.4e 8514   III: 6820935-6821025
CDS:R13F6.4f R13F6.4f 8292   III: 6823330-6823501

1 Laboratories

Primary Identifier
RU

11 Phenotype

Identifier Name Description
WBPhenotype:0000977 somatic gonad morphology variant Animals exhibit variations in the form, structure or composition of the components of the gonad that are separate from the germline proper compared to control animals.
WBPhenotype:0000290 sperm absent Animals lack fully specialized male gametes that are competent for fertilization.
WBPhenotype:0000594 cell migration variant Any variation in the orderly movement of a cell from one site to another.
WBPhenotype:0000651 constipated Animals exhibit delayed or infrequent passage and/or expulsion of fecal matter.
WBPhenotype:0000690 gonad migration variant Variations in the gross movement of the whole structure of the gonad along the body wall, behind the gonadal leader cell and away from the developing vulva compared to control (Wormatlas).
WBPhenotype:0000505 male ray morphology variant Animals exhibit variations in the structure or organization of any of the finger-like sensory sensilla that project from the tail and embed in the male fan compared to control animals. In C. elegans, nine bilateral rays project from the tail in a radial pattern with a smooth and slightly tapered appearance. Although one neuronal member of each ray sensillum is exposed to the outside, male rays rarely take up dye.
WBPhenotype:0000666 ovulation variant Any variation that disrupts the release of a mature oocyte into the spermatheca (for subsequent fertilization), compared to control.
WBPhenotype:0000189 hypodermis disorganized Hypodermal cells fail to be organized in the same manner as observed in control animals. In C. elegans, hypodermal cells typically organize into distinct dorsal, lateral and ventral rows and cover the entire body.
WBPhenotype:0000668 endomitotic oocytes Any variation that results in the presence of mature oocytes with distended polyploid nuclei. In C. elegans, such oocytes mature and exit diakinesis, but are often not properly ovulated or fertilized.
WBPhenotype:0000710 intestinal morphology variant Animals exhibit variations in the form, structure or composition of the chain of cuboidal cells which form a central lumen lined by microvilli that allow the passage of food, compared to control. Food passes from the posterior pharynx to the intestine where it is digested and then on to the rectum which processes the waste products for excretion (Wormatlas).
WBPhenotype:0001659 spermatheca morphology variant Any variation in the form, structure or composition of the somatic gonad structure that connects the distal gonad arm to the uterus compared to control (Wormatlas).

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00025239

0 Strain