WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00093780 Phenotype Remark  Defects in dorsal and ventral muscle migration in the developing body wall muscles.
Remark  Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation. In addition, did not state whether injection or feeding was used, just reported both methods.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001328 epi-1 K08C7.3 Caenorhabditis elegans
WBGene00002248 lam-3 T22A3.8 Caenorhabditis elegans

7 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K08C7.3a K08C7.3a 11115   IV: 10666833-10667028
CDS:K08C7.3e K08C7.3e 11088   IV: 10666833-10667028
CDS:K08C7.3f K08C7.3f 11148   IV: 10666833-10667028
CDS:K08C7.3b K08C7.3b 11019   IV: 10666833-10667028
CDS:K08C7.3c K08C7.3c 11052   IV: 10666833-10667028
CDS:K08C7.3d K08C7.3d 10992   IV: 10666833-10667028
CDS:T22A3.8 T22A3.8 9309   I: 10608493-10608625

1 Laboratories

Primary Identifier
DM

2 Phenotype

Identifier Name Description
WBPhenotype:0000594 cell migration variant Any variation in the orderly movement of a cell from one site to another.
WBPhenotype:0000861 body wall muscle development variant Any variation in the progression of the principal muscle cell type whose contractile activity generates body motion in the nematode over time compared to control. In C. elegans they consist of 95 unfused cells in the adult organized into four muscle quadrants. Their sarcomeres are obliquely striated and lie lengthwise along the body wall (Wormatlas).

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00040048

0 Strain