WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00090862 Genotype  unc-119(ed3) III; cbgIs91[pPept-1:pept-1::DsRed;unc-119(+)]; cbgIs98[pPept-1:GFP::rab-11.1;unc-119(+)]
Phenotype Remark  PEPT-1::DsRED accumulated in fuzzy or irregularly shaped structures; PEPT-1::DsRed can be retained in misplaced RAB-11-recycling endosomes (REs); GFP::RAB-11 recycling endosomes (REs) localise basally; GFP::RAB-11 recycling endosomes (REs) distribute evenly or scatter throughout the cell Remark  (Table S1, S3, Figure 3d) F55C12.1 RNAi

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018869 rfip-1 F55C12.1 Caenorhabditis elegans

4 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F55C12.1c F55C12.1c 1251   II: 5886455-5886496
CDS:F55C12.1a F55C12.1a 1365   II: 5890496-5890651
CDS:F55C12.1b F55C12.1b 1416   II: 5886455-5886496
CDS:F55C12.1d F55C12.1d 1407   II: 5884631-5884663

1 Laboratories

Primary Identifier
MZE

2 Phenotype

Identifier Name Description
WBPhenotype:0000679 transgene subcellular localization variant Any variation in the subcellular localization of a gene product produced by DNA coded for by exogenous genetic material that has been introduced into the organism compared to its expression in control animals.
WBPhenotype:0002107 RAB-11 recycling endosome localization variant Any variation in the subcellular localization of membrane bound organelles, known as recycling endosomes, positive for the RAB protein RAB-11, that traffic material from early endosomes back to the plasma membrane of the cell, thereby recycling recently endocytosed material to be reused at the plasma membrane.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00041129

0 Strain