WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00078124 Phenotype Remark  More than 90 percent of L1 stage animals had abnormal body morphology, prominent swelling near the vulva and intestines.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

3 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006584 tni-1 F42E11.4 Caenorhabditis elegans
WBGene00006585 tni-3 T20B3.2 Caenorhabditis elegans
WBGene00006764 unc-27 ZK721.2 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F42E11.4 F42E11.4 753   X: 11376161-11376307
CDS:T20B3.2 T20B3.2 783   V: 16833786-16834043
CDS:ZK721.2 ZK721.2 729   X: 8789456-8789605

1 Laboratories

Primary Identifier
HK

8 Phenotype

Identifier Name Description
WBPhenotype:0000643 locomotion variant Animals exhibit deviations in self-propelled movement on a solid medium compared to control animals.
WBPhenotype:0000006 egg laying defective Eggs are not laid, laid at a slower rate or eggs are laid at a later stage of development compared to control.
WBPhenotype:0000072 body morphology variant Animals exhibit variations in the form, structure or composition of any portion of their anatomy between the head and the tail compared to control animals.
WBPhenotype:0000651 constipated Animals exhibit delayed or infrequent passage and/or expulsion of fecal matter.
WBPhenotype:0000904 muscle cell morphology variant Any variation in the morphological appearance of muscle cells compared to control animals.
WBPhenotype:0000709 pharyngeal morphology variant Variations in the form or composition of the mouthparts at the anterior end of the digestive tract which contain a series of radial muscles, related neurons and epithelial cells, and several gland cells which may aid in digestion compared to control (Wormatlas).
WBPhenotype:0001395 body vacuole Vacuoles accumulate in the body. A vacuole is a closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material.
WBPhenotype:0001211 cuticle integrity variant The physical strength or function of the cuticle varies from that observed for control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00025009

0 Strain