WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00108034 Genotype  daf-2(e1370)
Phenotype Remark  "Our RNAi screen was designed to identify serine/threonine phosphatases that modulated dauer formation of daf-2(e1370), a non-null, temperature-sensitive mutant of the C. elegans insulin/ IGF-1 receptor gene, daf-2 [39]. We were particularly interested in phosphatases that would negatively regulate IIS similar to DAF-18/PTEN, and for all RNAi based assays described below, daf-18 RNAi was used as a positive control [39]. From this screen, we identified pdp-1 as a modulator of daf-2(e1370) dauer formation (Figure 1A and Figure S2)... pdp-1 RNAi significantly reduces dauer formation of daf-2(e1370) worms, similar to daf-18 RNAi (Figure 1A and Figure S2)." Remark  (Figure 1A,1C,S2A-B, Table 1) pdp-1 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00022832 pdp-1 ZK973.3 Caenorhabditis elegans
WBGene00022834 ZK973.8 ZK973.8 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK973.3 ZK973.3 1356   I: 4368106-4368182

0 Laboratories

1 Phenotype

Identifier Name Description
WBPhenotype:0000637 dauer formation variant Characteristic entry into the dauer stage is altered compared to control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00038374

0 Strain