WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00108082 Genotype  daf-14(m77)
Phenotype Remark  "For this, we assayed dauer formation of TGF-b pathway mutants on daf-18 and daf-16 RNAi (Table 3 and Figure S10). Interestingly, dauer formation of daf-7(e1372), daf-14(m77) and daf-8(m85) worms was robustly suppressed by daf-16 RNAi. We observed similar results for dauer formation daf-7(e1372) and daf-14(m77) mutants on daf-18 RNAi. However, in the case of daf-8(m85) mutants, daf-18 RNAi had no effect on dauer formation of (Figure S10), suggesting a complex crosstalk between both pathways." Remark  (Table 3 and Figure S10) daf-16 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000912 daf-16 R13H8.1 Caenorhabditis elegans

11 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R13H8.1h R13H8.1h 1626   I: 10750498-10750509
CDS:R13H8.1i R13H8.1i 1548   I: 10750632-10750655
CDS:R13H8.1f R13H8.1f 1554   I: 10750632-10750655
CDS:R13H8.1b R13H8.1b 1527   I: 10763103-10763347
CDS:R13H8.1m R13H8.1m 1218   I: 10763654-10763706
CDS:R13H8.1a R13H8.1a 1593   I: 10771508-10772149
CDS:R13H8.1e R13H8.1e 912   I: 10772999-10773121
CDS:R13H8.1c R13H8.1c 1533   I: 10763103-10763347
CDS:R13H8.1d R13H8.1d 1464   I: 10750960-10750984
CDS:R13H8.1k R13H8.1k 1458   I: 10750960-10750984
CDS:R13H8.1l R13H8.1l 1224   I: 10763654-10763706

0 Laboratories

1 Phenotype

Identifier Name Description
WBPhenotype:0000637 dauer formation variant Characteristic entry into the dauer stage is altered compared to control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00038374

0 Strain