WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00083963 Genotype  GFP::PGL-1
Phenotype Remark  In the par-3(RNAi) par-1(RNAi) embryo, P granules disappeared, hence the ectopic stabilization of P granules seen in par-3(RNAi) depends on the presence of PAR-1. Remark  Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003916 par-1 H39E23.1 Caenorhabditis elegans
WBGene00003918 par-3 F54E7.3 Caenorhabditis elegans

18 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54E7.3j F54E7.3j 3984   III: 5664372-5664539
CDS:H39E23.1b H39E23.1b 3291   V: 14112802-14112915
CDS:H39E23.1l H39E23.1l 3321   V: 14112802-14112915
CDS:H39E23.1h H39E23.1h 2118   V: 14112802-14112915
CDS:H39E23.1g H39E23.1g 3126   V: 14112802-14112915
CDS:H39E23.1d H39E23.1d 3651   V: 14112802-14112915
CDS:H39E23.1c H39E23.1c 3189   V: 14112802-14112915
CDS:H39E23.1m H39E23.1m 3390   V: 14117600-14117770
CDS:F54E7.3a F54E7.3a 4131   III: 5664372-5664539
CDS:F54E7.3b F54E7.3b 4140   III: 5664372-5664539
CDS:F54E7.3h F54E7.3h 4593   III: 5664372-5664539
CDS:F54E7.3i F54E7.3i 4602   III: 5664372-5664539
CDS:F54E7.3k F54E7.3k 3993   III: 5664372-5664539
CDS:H39E23.1a H39E23.1a 3579   V: 14112802-14112915
CDS:H39E23.1e H39E23.1e 2901   V: 14117600-14117770
CDS:H39E23.1f H39E23.1f 3312   V: 14112802-14112915
CDS:H39E23.1j H39E23.1j 3603   V: 14112802-14112915
CDS:H39E23.1k H39E23.1k 1785   V: 14112802-14112915

1 Laboratories

Primary Identifier
LP

1 Phenotype

Identifier Name Description
WBPhenotype:0001301 P granule abnormal Localization or structural appearance of P-granules is altered compared to control. P-granules are cytoplasmic structures associated with germ nuclei in the C. elegans gonad, and are localized exclusively to germ cells, or germ cell precursors, throughout the life cycle.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00013493

0 Strain