WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00083574 Genotype  rrf-1(pk1417); glp-1(oz264)
Phenotype Remark  Abnormal oocytes.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010719 K09E4.1 K09E4.1 Caenorhabditis elegans
WBGene00012230 cacn-1 W03H9.4 Caenorhabditis elegans

4 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W03H9.4a W03H9.4a 1974   II: 14133584-14133820
CDS:W03H9.4c W03H9.4c 591   II: 14133584-14133820
CDS:W03H9.4b W03H9.4b 1038   II: 14133584-14133820
CDS:K09E4.1 K09E4.1 1104   II: 14137886-14138059

1 Laboratories

Primary Identifier
BS

6 Phenotype

Identifier Name Description
WBPhenotype:0000688 sterile Animals generate defective gametes, are otherwise unable to reproduce or they generate progeny that are unable to reproduce.
WBPhenotype:0001260 oocyte morphology variant Haploid female germ cells (oocytes) exhibit variations in their overall structure, appearance or contents compared to control.
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000690 gonad migration variant Variations in the gross movement of the whole structure of the gonad along the body wall, behind the gonadal leader cell and away from the developing vulva compared to control (Wormatlas).
WBPhenotype:0000812 germ cell development variant Variations in the progression of the immature germ cell over time, from its formation from precursors to the mature structure (gamete) compared to control.
WBPhenotype:0001925 oocytes disorganized Oocytes are no longer arranged in the gonad in the same manner as control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00036244

0 Strain