WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00085523 Phenotype Remark 
Remark 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004161 pqn-80 Y111B2A.14 Caenorhabditis elegans

10 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y111B2A.14a Y111B2A.14a 4251   III: 12626575-12626718
CDS:Y111B2A.14s Y111B2A.14s 2448   III: 12626575-12626718
CDS:Y111B2A.14b Y111B2A.14b 4341   III: 12626575-12626718
CDS:Y111B2A.14f Y111B2A.14f 3681   III: 12628947-12629306
CDS:Y111B2A.14g Y111B2A.14g 3762   III: 12628947-12629306
CDS:Y111B2A.14h Y111B2A.14h 3672   III: 12628947-12629306
CDS:Y111B2A.14c Y111B2A.14c 4350   III: 12626575-12626718
CDS:Y111B2A.14d Y111B2A.14d 4260   III: 12626575-12626718
CDS:Y111B2A.14e Y111B2A.14e 3771   III: 12628947-12629306
CDS:Y111B2A.14t Y111B2A.14t 2448   III: 12626575-12626718

1 Laboratories

Primary Identifier
OD

7 Phenotype

Identifier Name Description
WBPhenotype:0000688 sterile Animals generate defective gametes, are otherwise unable to reproduce or they generate progeny that are unable to reproduce.
WBPhenotype:0001952 germline nuclear positioning variant Variations in the directed movement/or positioning of a nucleus to a specific location within the germline compartment compared to control.
WBPhenotype:0001982 cell membrane organization biogenesis variant Variations in the process(es) involved in the assembly, transport, arrangement or disassembly of cell membrane structures or components compared to control.
WBPhenotype:0001810 oocyte septum formation variant Animals exhibit variations in the partitioning of oocytes from each other compared to control animals.
WBPhenotype:0001969 germ cell compartment morphology variant Any variation in the form or composition of the compartments in the germline of females/hermaphrodites compared to control animals. In C. elegans these compartments contain a nucleus and are connected to a common cytoplasm (rachis). These compartments eventually undergo cellularization and become oocytes.
WBPhenotype:0001953 nuclear fallout Nuclei have fallen out of developing germ cell compartments into the rachis.
WBPhenotype:0001941 rachis narrow The nucleus-free core of germline cytoplasm in the gonad is not as wide as control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00038381

1 Strain

WormBase ID
WBStrain00029219