WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00004591 Secondary Identifier  JA:Y39G10A_236.e

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021009 afd-1 W03F11.6 Caenorhabditis elegans

14 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W03F11.6c W03F11.6c 4983   I: 2160071-2160199
CDS:W03F11.6f W03F11.6f 4695   I: 2160071-2160199
CDS:W03F11.6h W03F11.6h 3861   I: 2172031-2172170
CDS:W03F11.6l W03F11.6l 3396   I: 2185757-2185918
CDS:W03F11.6e W03F11.6e 3759   I: 2192428-2192747
CDS:W03F11.6a W03F11.6a 4977   I: 2160071-2160199
CDS:W03F11.6d W03F11.6d 4689   I: 2160071-2160199
CDS:W03F11.6g W03F11.6g 4149   I: 2172031-2172170
CDS:W03F11.6i W03F11.6i 3963   I: 2173800-2173866
CDS:W03F11.6j W03F11.6j 3675   I: 2173800-2173866
CDS:W03F11.6k W03F11.6k 3684   I: 2185757-2185918
CDS:W03F11.6m W03F11.6m 3438   I: 2192845-2192905
CDS:W03F11.6n W03F11.6n 3150   I: 2192845-2192905
CDS:W03F11.6o W03F11.6o 4497   I: 2168112-2168432

1 Laboratories

Primary Identifier
JA

0 Phenotype

8 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000886 nematode phenotype Animals exhibit variations compared to a given control.
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000031 slow growth Any variation that causes a reduction in growth rate compared to control.
WBPhenotype:0000054 larval lethal The animal dies at any time between hatching and onset to adulthood.
WBPhenotype:0000059 larval arrest The developmental program of the animals halts at any larval stage and thus fails to reach adulthood. In C.elegans, this occurs anytime during L1-L4 stage.
WBPhenotype:0001037 sterile progeny Any variation that compromises the reproductive ability of the progeny of an animal.
WBPhenotype:0000049 postembryonic development variant Any variation in the progression of an animal over time, from hatching to adulthood, compared to control.
WBPhenotype:0000689 maternal sterile Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility).

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00004402

0 Strain