WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00019426 Secondary Identifier  JA:VB0393L.1

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

6 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007173 B0393.8 B0393.8 Caenorhabditis elegans
WBGene00009052 ekl-1 F22D6.6 Caenorhabditis elegans
WBGene00017952 F31E3.6 F31E3.6 Caenorhabditis elegans
WBGene00043279 F22D6.8 F22D6.8 Caenorhabditis elegans
WBGene00012146 VB0393L.2 VB0393L.2 Caenorhabditis elegans
WBGene00050947 K07C5.13 K07C5.13 Caenorhabditis elegans

5 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F22D6.8 F22D6.8 303   I: 7099007-7099144
CDS:VB0393L.2 VB0393L.2 402   III: 4749794-4749840
CDS:B0393.8 B0393.8 402   III: 4751878-4752131
CDS:F31E3.6 F31E3.6 402   III: 6982570-6982616
CDS:K07C5.13b K07C5.13b 258   V: 10342055-10342292

1 Laboratories

Primary Identifier
JA

0 Phenotype

8 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000886 nematode phenotype Animals exhibit variations compared to a given control.
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000031 slow growth Any variation that causes a reduction in growth rate compared to control.
WBPhenotype:0000054 larval lethal The animal dies at any time between hatching and onset to adulthood.
WBPhenotype:0000059 larval arrest The developmental program of the animals halts at any larval stage and thus fails to reach adulthood. In C.elegans, this occurs anytime during L1-L4 stage.
WBPhenotype:0001037 sterile progeny Any variation that compromises the reproductive ability of the progeny of an animal.
WBPhenotype:0000049 postembryonic development variant Any variation in the progression of an animal over time, from hatching to adulthood, compared to control.
WBPhenotype:0000689 maternal sterile Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility).

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00005654

0 Strain