WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00076754 Genotype  Punc-54::a-syn::gfp, Punc-54::tor-2
Phenotype Remark  Primary screen (adults). RNAi treatment enhanced aggregation of a-syn in worms coexpressing a-syn::GFP and TOR-2. The misfolded protein appeared over developmental time and was randomly distributed in the cytoplasm of the body-wall muscle cells.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006710 ubc-15 Y110A2AR.2 Caenorhabditis elegans

5 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y110A2AR.2b Y110A2AR.2b 687   II: 2902522-2902539
CDS:Y110A2AR.2a Y110A2AR.2a 657   II: 2906542-2906721
CDS:Y110A2AR.2d Y110A2AR.2d 1623   II: 2902522-2902539
CDS:Y110A2AR.2e Y110A2AR.2e 720   II: 2901790-2901840
CDS:Y110A2AR.2f Y110A2AR.2f 1656   II: 2901790-2901840

1 Laboratories

Primary Identifier
UA

2 Phenotype

Identifier Name Description
WBPhenotype:0000679 transgene subcellular localization variant Any variation in the subcellular localization of a gene product produced by DNA coded for by exogenous genetic material that has been introduced into the organism compared to its expression in control animals.
WBPhenotype:0001405 protein aggregation variant Variations that result in the accumulation of soluble/insoluble protein aggregates in a particular cell or tissue, compared to control. Protein aggregates are often formed by interactions between misfolded protein molecules and/or deficiencies in proper protein folding.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00031384

0 Strain