WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00102829 Phenotype Remark  sphk-1(RNAi) resulted in increased numbers of LGG-1::GFP puncta, suggesting increased levels of autophagy, in the lagr-1(gk331);hyl-1(ok976) double mutant background
Remark  (Figure 2F) sphk-1 RNAi
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007918 sphk-1 C34C6.5 Caenorhabditis elegans

4 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C34C6.5a C34C6.5a 1422   II: 8699330-8699470
CDS:C34C6.5b C34C6.5b 1272   II: 8699330-8699470
CDS:C34C6.5c C34C6.5c 1185   II: 8699330-8699470
CDS:C34C6.5d C34C6.5d 1017   II: 8699330-8699470

1 Laboratories

Primary Identifier
FE

2 Phenotype

Identifier Name Description
WBPhenotype:0000679 transgene subcellular localization variant Any variation in the subcellular localization of a gene product produced by DNA coded for by exogenous genetic material that has been introduced into the organism compared to its expression in control animals.
WBPhenotype:0002282 autophagy increased Animals exhibit increased levels of the process by which their cells digest parts of their own cytoplasm, compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00043981

0 Strain