WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00108056 Genotype  daf-2(e1370); daf-16::gfp
Phenotype Remark  "We therefore asked whether PDP-1 modulates DAF-16 subcellular localization as well as activity (Figure 3A and Figure S8). daf- 2(e1370); daf-16::gfp worms were grown on vector, daf-18 and pdp-1 RNAi, and DAF-16 nuclear/cytosolic localization was visualized using fluorescence microscopy and quantified. Throughout the body of the worm, while DAF-16::GFP was mostly nuclear on vector RNAi, its localization was enriched in the cytosol on pdp-1 RNAi, similar to daf-18 RNAi (Figure 3A and Figure S8)." Remark  (Figure 3A, S8A) daf-18 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000913 daf-18 T07A9.6 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T07A9.6 T07A9.6 2889   IV: 420426-420545

0 Laboratories

1 Phenotype

Identifier Name Description
WBPhenotype:0000679 transgene subcellular localization variant Any variation in the subcellular localization of a gene product produced by DNA coded for by exogenous genetic material that has been introduced into the organism compared to its expression in control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00038374

0 Strain