WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00085309 Genotype  pkIs1661
Phenotype Remark  mut-16 RNAi results in increased expression of a pie-1::Tc1-TIR::GFP transgene in the germline, indicative of reduced germline transposon silencing

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003508 mut-16 B0379.3 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0379.3a B0379.3a 3165   I: 10080162-10080401
CDS:B0379.3b B0379.3b 3153   I: 10080162-10080401

1 Laboratories

Primary Identifier
NL

2 Phenotype

Identifier Name Description
WBPhenotype:0000745 transposon silencing variant Animals exhibit variations in the activity of endogenous transposons compared to control. In C. elegans transposon activity is often measured by the rate of reversion of mutations induced by transposon insertions.
WBPhenotype:0001594 germline transgene silencing variant Animals exhibit variations in the homology-dependent transcriptional level silencing of the expression of exogenous DNA that has been introduced into the organism, in the germline, compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00006203

0 Strain