WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00098793 Genotype  mes-1(bn74)
Phenotype Remark  Enhanced endoderm-specification defects. With mes-1(bn74) the background, 95 percent of animals are lacking intestine compared to 3 percent with dsh-2; mig-5(RNAi)alone. Remark  Exact sequence used for RNAi not stated by authors, spliced coding region sequence of gene used for curation. Method of delivery not explicit, authors say injection or feeding.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001102 dsh-2 C27A2.6 Caenorhabditis elegans
WBGene00003241 mig-5 T05C12.6 Caenorhabditis elegans

4 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05C12.6b T05C12.6b 2001   II: 8182509-8182639
CDS:T05C12.6c T05C12.6c 1878   II: 8182509-8182639
CDS:C27A2.6 C27A2.6 2280   II: 5078429-5078567
CDS:T05C12.6a T05C12.6a 2019   II: 8182478-8182626

1 Laboratories

Primary Identifier
WM

2 Phenotype

Identifier Name Description
WBPhenotype:0001637 no Intestine Embryos fail to generate cells that exhibit intestinal specification. In C. elegans, the E blastomere is the precursor of all the intestinal cells.
WBPhenotype:0000708 intestinal development variant Variations in the progression of the intestine over time from its initial formation to its mature structure compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00035593

0 Strain