WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00065547 Phenotype Remark  embryos rupture, often from the ventral side, indicating that ventral epidermal cells do not adhere properly to each other after ventral enclosure
Remark  the monoclonal antibody MH27 recognizes adherens junctions in the epidermis, the pharynx and the intestine

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002632 let-413 F26D11.11 Caenorhabditis elegans

6 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F26D11.11b F26D11.11b 2100   V: 7973449-7973553
CDS:F26D11.11c F26D11.11c 2121   V: 7973449-7973553
CDS:F26D11.11e F26D11.11e 2049   V: 7973449-7973553
CDS:F26D11.11f F26D11.11f 2010   V: 7973552-7973553
CDS:F26D11.11a F26D11.11a 2031   V: 7973552-7973553
CDS:F26D11.11d F26D11.11d 2070   V: 7973449-7973553

1 Laboratories

Primary Identifier
ML

5 Phenotype

Identifier Name Description
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000707 pharyngeal development variant Variations in the progression of the pharynx (feeding organ) over time, from its formation to the mature structure compared to control. In C. elegans the pharynx is divided into the anterior and posterior regions. The anterior region includes the corpus (procorpus and metacorpus - first bulb) and the posterior region includes the isthmus and terminal bulb (second bulb).
WBPhenotype:0001478 body elongation variant Any variation in the elongation of embryonic epidermal cells compared to control. In C. elegans, this elongation occurs along an anterior-posterior axis, which is required to transform the bean-shaped embryo into the elongated shape of the worm.
WBPhenotype:0000703 epithelial morphology variant Variations in the form, composition or structure of the layer of cells that cover the external surface of an organism and form the inner lining between the tissues and organs of that organism and the external environment compared to control. In C. elegans epithelial cells include epithelium of the alimentary tract, intestinal cells, hypodermis, interfacial cells and somatic gonad cells (Wormatlas).
WBPhenotype:0000902 intestinal cell morphology variant Any variation in the morphological appearance of intestinal cells compared to control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00004214

0 Strain