WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00078433 Phenotype Remark  RGR-1 is required broadly for early embryonic transcription. Authors used various transgenes to show this. They also showed that maternal PIE-1::GFP expression and localization patterns appeared normal at every stage, therefore RGR-1 does not detectably affect maternal mRNA stores but may broadly impair new mRNA transcription.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004343 rgr-1 C38C10.5 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C38C10.5a C38C10.5a 4149   III: 9394104-9394247
CDS:C38C10.5b C38C10.5b 4167   III: 9394104-9394247

1 Laboratories

Primary Identifier
LD

4 Phenotype

Identifier Name Description
WBPhenotype:0000867 embryonic arrest Cessation of development during any stage occurring after fertilization and until hatching compared to control.
WBPhenotype:0000354 cell differentiation variant Variations in the processes leading to the specialization of cell. Differentiation impacts diverse cellular properties such as size, shape, polarity, gene expression and responsiveness to signals/cues.
WBPhenotype:0000113 RNA expression variant Variations in the biogenesis and stability of any class of RNA molecules (rRNAs, miRNAs, tRNAs etc) compared to control.
WBPhenotype:0001351 protein phosphorylation reduced Animals exhibit decreased levels of protein phosphorylation compared to that observed in control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00005433

0 Strain