WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00097408 Phenotype Remark  ifg-1 RNAi using construct N1, which targets both ifg-1 p170 and p130 mRNAs, not only prevented germ cell development but also stunted somatic growth of the worms. Germ cells progressed normally through pachytene stages but did not complete diakinesis. All ifg-1(RNAi) worms displayed marked deterioration in the proximal gonad.
Remark  (Figure 4b, 4c) ifg-1 RNAi (construct N1)

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002066 ifg-1 M110.4 Caenorhabditis elegans

5 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M110.4a M110.4a 3471   II: 8217254-8217302
CDS:M110.4b M110.4b 3468   II: 8217254-8217302
CDS:M110.4d M110.4d 3480   II: 8217254-8217302
CDS:M110.4c M110.4c 3129   II: 8217839-8218837
CDS:M110.4e M110.4e 3483   II: 8217254-8217302

1 Laboratories

Primary Identifier
KX

5 Phenotype

Identifier Name Description
WBPhenotype:0000154 reduced brood size The characteristic number of offspring produced is lower compared to that of control animals.
WBPhenotype:0000229 small Animals are shorter and thinner than control animals at the same developmental stage.
WBPhenotype:0000812 germ cell development variant Variations in the progression of the immature germ cell over time, from its formation from precursors to the mature structure (gamete) compared to control.
WBPhenotype:0001948 diakinesis progression during oogenesis variant Developing oocytes show defects in their entry, progression through or exit from the diakinesis stage compared to control animals. Diakinesis is a cell cycle process comprising the steps by which a cell progresses through the final stage of prophase I in meiosis; the transition to meiotic metaphase I.
WBPhenotype:0001958 gonad degenerate Animals contain a gonad that initially functioned, but subsequently stopped. In hermaphrodites or females there is often the presence old embryos and/or hatched larva, but no young embryos, in the uterus.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00031847

0 Strain