WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00114093 Phenotype Remark  Bend dorsally and pinches, constriction pt. caused by unfused dorsal cell?, arrest at 1.25 fold, dorsal intercalation defect consists of failure to fuse two posterior and one anterior boundary
Remark  (Table S2) hmr-1 RNAi

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001980 hmr-1 W02B9.1 Caenorhabditis elegans

4 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W02B9.1d W02B9.1d 3195   I: 11076372-11076623
CDS:W02B9.1a W02B9.1a 3810   I: 11076372-11076623
CDS:W02B9.1b W02B9.1b 8763   I: 11076372-11076623
CDS:W02B9.1e W02B9.1e 2805   I: 11076372-11076623

0 Laboratories

5 Phenotype

Identifier Name Description
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0001908 ventral closure defective The animal displays defects in any step of the ventral enclosure process resulting an embryo that is not enclosed and or with interior cells protruding out of the embryo.
WBPhenotype:0001907 dorsal intercalation defective Animals exhibit defects in the generation of the dorsal epithelial sheet, which entails distinct cell shape changes and movements to affect the interdigitation of two rows of dorsal cells resulting in a single row of cells across the dorsal midline.
WBPhenotype:0000367 comma arrest emb Cessation of development during the middle stage in embryogenesis of the worm in which the embryo is slightly folded within the eggshell (Wormatlas).
WBPhenotype:0000368 one point five fold arrest emb Cessation of development that normally occurs in C. elegans 420-460 min after the first embryonic cleavage at 20C, the stage between the comma and 2-fold embryo.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00056424

1 Strain

WormBase ID
WBStrain00047118