WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00059919 Phenotype Remark  Simultaneous knock down of pmr-1 and smf-3 could effectively increase the survival rate of smf-3 RNAi worms to the level of wild type worms.
Remark  Entire sequence of clone used for RNAi not known as only the ends of the sequence were determined. The only target shown is the best match.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004063 pmr-1 ZK256.1 Caenorhabditis elegans
WBGene00004878 smf-3 Y69A2AR.4 Caenorhabditis elegans

4 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK256.1a ZK256.1a 2706   I: 13012220-13012531
CDS:ZK256.1b ZK256.1b 2118   I: 13012220-13012531
CDS:Y69A2AR.4 Y69A2AR.4 1683   IV: 2619891-2619998
CDS:ZK256.1c ZK256.1c 2937   I: 13011462-13011500

1 Laboratories

Primary Identifier
KJ

1 Phenotype

Identifier Name Description
WBPhenotype:0000067 organism stress response variant Animals exhibit variations in response to stress stimuli compared to control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00024915

1 Strain

WormBase ID
WBStrain00000001