WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00064770 Remark  Genetic enhancer interactions are identified by comparing RNAi phenotypes of library genes in wild-type animals with those seen in mutant worms carrying a defined lesion in a single query gene; a genetic interaction between a query gene and a library gene is observed if the phenotype of the combined perturbation is greater than the sum of the two individual perturbations.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001330 eps-8 Y57G11C.24 Caenorhabditis elegans

11 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y57G11C.24n Y57G11C.24n 2832   IV: 14879563-14879615
CDS:Y57G11C.24o Y57G11C.24o 2757   IV: 14879563-14879615
CDS:Y57G11C.24h Y57G11C.24h 2223   IV: 14879566-14879615
CDS:Y57G11C.24i Y57G11C.24i 2829   IV: 14879566-14879615
CDS:Y57G11C.24a Y57G11C.24a 2589   IV: 14885688-14885703
CDS:Y57G11C.24d Y57G11C.24d 2538   IV: 14886649-14886834
CDS:Y57G11C.24e Y57G11C.24e 1998   IV: 14891466-14891774
CDS:Y57G11C.24g Y57G11C.24g 2754   IV: 14879566-14879615
CDS:Y57G11C.24j Y57G11C.24j 2664   IV: 14885688-14885703
CDS:Y57G11C.24k Y57G11C.24k 2613   IV: 14886649-14886834
CDS:Y57G11C.24l Y57G11C.24l 2073   IV: 14891466-14891774

1 Laboratories

Primary Identifier
ANF

1 Phenotype

Identifier Name Description
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00027756

1 Strain

WormBase ID
WBStrain00035412