WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00086287 Genotype  sqt-1(sc13); unc-4(e120)
Phenotype Remark  RNAi of lin-42 resulted in premature migration of the distal tip cell (gonad arm) to the dorsal side and premature vulval precursor cell (VPC) division in the L2 larva Remark  Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018572 lin-42 F47F6.1 Caenorhabditis elegans

4 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F47F6.1e F47F6.1e 1011   II: 1234175-1234429
CDS:F47F6.1d F47F6.1d 1965   II: 1234175-1234429
CDS:F47F6.1a F47F6.1a 894   II: 1234175-1234429
CDS:F47F6.1b F47F6.1b 1794   II: 1234175-1234429

1 Laboratories

Primary Identifier
RG

2 Phenotype

Identifier Name Description
WBPhenotype:0001494 distal tip cell migration precocious DTCs migrate at an earlier stage of development, compared to control.
WBPhenotype:0001493 VPC cell division precocious VPCs (vulval precursor cells) divide at an earlier stage of development compared to control animals; in C. elegans, VPCs divide in the mid-L3 stage to generate the 22 cells that comprise the vulva.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00028283

0 Strain