WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00110244 Genotype  zcIs13 [hsp-6p::GFP]; rmIs101 [rgef-1p::Q40::YFP]
Phenotype Remark  "These expression changes were also assessed using immunoblots for GRP75/HSP6 and GFP from animals harvested prior to reproduction to negate embryonic HSP-6 protein levels (Figure S2A). RNAi-mediated knockdown of atfs-1 and clpp-1 resulted in a relative decrease in HSP6 expression and a robust decrease in the GFP marker of hsp-6 reporter expression." Remark  (Figure S2A) clpp-1 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

6 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007022 mdt-22 ZK970.3 Caenorhabditis elegans
WBGene00014172 clpp-1 ZK970.2 Caenorhabditis elegans
WBGene00014638 ZK970.t4 ZK970.t4 Caenorhabditis elegans
WBGene00014635 ZK970.t1 ZK970.t1 Caenorhabditis elegans
WBGene00014637 ZK970.t3 ZK970.t3 Caenorhabditis elegans
WBGene00014636 ZK970.t2 ZK970.t2 Caenorhabditis elegans

4 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK970.2a ZK970.2a 621   II: 10300824-10300934
CDS:ZK970.3 ZK970.3 474   II: 10301247-10301321
CDS:ZK970.2b ZK970.2b 354   II: 10300824-10300934
CDS:ZK970.2d ZK970.2d 666   II: 10300824-10300934

0 Laboratories

1 Phenotype

Identifier Name Description
WBPhenotype:0000120 protein expression reduced Any change that results in lower than normal levels of protein expression compared to control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00050142

0 Strain