WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00077785 Phenotype Remark  Sperm was completely absent in the spermatheca of rpn-10;ufd-2 (RNAi) worms.
Remark  Exact sequence used for RNAi not stated by authors, spliced coding region sequence of gene used for curation. Authors amplified by PCR from a C. elegans mixed stage cDNA library. Primer sequences are available from the author on request.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004466 rpn-10 B0205.3 Caenorhabditis elegans
WBGene00006734 ufd-2 T05H10.5 Caenorhabditis elegans

4 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T05H10.5a T05H10.5a 2943   II: 8062752-8062808
CDS:T05H10.5b T05H10.5b 2955   II: 8062752-8062808
CDS:B0205.3 B0205.3 1041   I: 10730928-10731299
CDS:T05H10.5c T05H10.5c 2940   II: 8062752-8062808

0 Laboratories

1 Phenotype

Identifier Name Description
WBPhenotype:0000290 sperm absent Animals lack fully specialized male gametes that are competent for fertilization.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00028730

1 Strain

WormBase ID
WBStrain00000001