WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00114415 Genotype  rde-1(ne219) V; kbIs7[nhx-2::rde-1]
Phenotype Remark  Hypersensitive to Cry5B in life span Remark  lgg-2 RNAi (Fig. 3A) Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002981 lgg-2 ZK593.6 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK593.6a ZK593.6a 429   IV: 10934764-10934917
CDS:ZK593.6b ZK593.6b 225   IV: 10934764-10934917

0 Laboratories

1 Phenotype

Identifier Name Description
WBPhenotype:0002059 pore forming toxin hypersensitive Animals respond to pore forming toxins at a lower concentration or a shorter exposure compared to control animals. Increased susceptibility to pore forming toxins (e.g. Cry5B from Bacillus thuringiensis) is often measured by a decrease in the rate of survival in the presence of pore forming toxins compared to controls.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00050468

1 Strain

WormBase ID
WBStrain00040175