WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00116263 Phenotype Remark  RNAi against the riboflavin transporter rft-1 caused a defect in the pumping response to light.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

3 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021626 rft-2 Y47D7A.14 Caenorhabditis elegans
WBGene00044637 rft-1 Y47D7A.16 Caenorhabditis elegans
WBGene00021625 Y47D7A.13 Y47D7A.13 Caenorhabditis elegans

7 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47D7A.13 Y47D7A.13 936   V: 4434992-4435927
CDS:Y47D7A.16a Y47D7A.16a 1284   V: 4439162-4439245
CDS:Y47D7A.14a Y47D7A.14a 1392   V: 4443523-4443615
CDS:Y47D7A.14b Y47D7A.14b 1431   V: 4443523-4443615
CDS:Y47D7A.14d Y47D7A.14d 567   V: 4443523-4443615
CDS:Y47D7A.14c Y47D7A.14c 1023   V: 4443523-4443615
CDS:Y47D7A.14e Y47D7A.14e 294   V: 4443523-4443615

0 Laboratories

1 Phenotype

Identifier Name Description
WBPhenotype:0002446 pharyngeal pumping rate in response to light variant Animals exhibit variations in pharyngeal pumping rate in response to light, compared to controls.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00046411

0 Strain