WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00023876 Gene Name  Cbr-ssl-1
Sequence Name  ? CBG00497 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity and ATP-dependent chromatin remodeler activity. Is an ortholog of C. elegans ssl-1. In C. elegans, ssl-1 is involved in negative regulation of cell fate specification. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG00497.1 CBG00497.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG00497 CBG00497   [unknown]

0 RNAi Result

21 Allele

Public Name
WBVar00141355
WBVar00141351
WBVar00141352
WBVar00141353
WBVar00141354
WBVar00141337
WBVar00141338
WBVar00141339
WBVar00141335
WBVar00141336
WBVar00141348
WBVar00141349
WBVar00141344
WBVar00141345
WBVar00141346
WBVar00141347
WBVar00141340
WBVar00141341
WBVar00141342
WBVar00141343
WBVar00141350

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG00498, GCAAGGACCCAACGGCGGCCCTCAACAGCAGCGAATCAACGTGATGGTGCAACCGCAGAA, WBGene00023877   Expr1058631 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region