WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00024041 Gene Name  Cbr-shw-1
Sequence Name  ? CBG00686 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transport; protein homooligomerization; and transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Is an ortholog of C. elegans shw-1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

7 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG00686g.1 CBG00686g.1   [unknown]
Transcript:CBG00686f.1 CBG00686f.1   [unknown]
Transcript:CBG00686e.1 CBG00686e.1   [unknown]
Transcript:CBG00686d.1 CBG00686d.1   [unknown]
Transcript:CBG00686c.1 CBG00686c.1   [unknown]
Transcript:CBG00686b.1 CBG00686b.1   [unknown]
Transcript:CBG00686a.1 CBG00686a.1   [unknown]
 

Other

7 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG00686b CBG00686b   [unknown]
CDS:CBG00686c CBG00686c   [unknown]
CDS:CBG00686a CBG00686a   [unknown]
CDS:CBG00686f CBG00686f   [unknown]
CDS:CBG00686g CBG00686g   [unknown]
CDS:CBG00686d CBG00686d   [unknown]
CDS:CBG00686e CBG00686e   [unknown]

0 RNAi Result

1 Allele

Public Name
WBVar00135597

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG00686, GGGTATTGTAATATTTGCTGCACTGGTCTATTATGCGGAACGAGTCGAACGCAATGAGAA, WBGene00024041   Expr1057460 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

8 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in
  involved_in
  involved_in
  located_in
  part_of

0 Homologues

0 Locations

8 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in
  involved_in
  involved_in
  located_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region