WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00024180 Gene Name  Cbr-gcy-4
Sequence Name  ? CBG00851 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable protein kinase activity. Predicted to be involved in cyclic nucleotide biosynthetic process and intracellular signal transduction. Is an ortholog of C. elegans gcy-4. In C. elegans, gcy-4 is involved in chemosensory behavior; chemotaxis; and response to salt. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG00851a.1 CBG00851a.1   [unknown]
Transcript:CBG00851b.1 CBG00851b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG00851b CBG00851b   [unknown]
CDS:CBG00851a CBG00851a   [unknown]

0 RNAi Result

29 Allele

Public Name
WBVar00141469
WBVar00141467
WBVar00141468
WBVar00141470
WBVar00053754
WBVar00053749
WBVar00053744
WBVar00053714
WBVar00053719
WBVar00053704
WBVar00053709
WBVar00053739
WBVar00053734
WBVar00053729
WBVar00053724
WBVar00053674
WBVar00053679
WBVar00053669
WBVar00053699
WBVar00053694
WBVar00053684
WBVar00053689
WBVar00021634
WBVar00021639
WBVar00021644
WBVar00021649
WBVar00021654
WBVar00064488
WBVar00064493

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-gcy-4, AAATTCCGAATTCCCCACTTGCCGCGAGAGAGGGTGGAGCTAAGAGTTGGAGTTAATAGT, WBGene00024180   Expr1064750 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  involved_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region