WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00024201 Gene Name  Cbr-mtrr-1
Sequence Name  ? CBG00882 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable FMN binding activity and oxidoreductase activity. Is an ortholog of C. elegans mtrr-1. Biotype  SO:0001217
Genetic Position 
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG00882.1 CBG00882.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG00882 CBG00882   [unknown]

0 RNAi Result

11 Allele

Public Name
WBVar00065018
WBVar00065053
WBVar00065038
WBVar00065023
WBVar00065008
WBVar00065058
WBVar00065043
WBVar00065028
WBVar00065013
WBVar00065048
WBVar00065033

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  C.briggsae proteins that showed significantly increased at L4 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L4_vs_embryo_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tag-165, CGGAAAACGCGAAAATTTTCATTTGTGGCGACGCGAAGGGCATGTCGAAAGACGTTTGGC, WBGene00024201   Expr1058116 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  enables

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region