WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00024253 Gene Name  Cbr-exc-7
Sequence Name  ? CBG00948 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable RNA binding activity. Predicted to be part of ribonucleoprotein complex. Is an ortholog of C. elegans exc-7. In C. elegans, exc-7 is involved in several processes, including epithelial cell development; regulation of alternative mRNA splicing, via spliceosome; and regulation of neuron differentiation. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG00948a.1 CBG00948a.1   [unknown]
Transcript:CBG00948b.1 CBG00948b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG00948a CBG00948a   [unknown]
CDS:CBG00948b CBG00948b   [unknown]

0 RNAi Result

4 Allele

Public Name
WBVar00043427
WBVar00043442
WBVar00043447
WBVar00043407

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-exc-7, CAAAAATGCAAGGGCTACGCGTTCGTCTCGATGAGCACCTACACAGAGGCCTATAATGCA, WBGene00024253   Expr1061129 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  part_of
  enables

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  part_of
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region