WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00024394 Gene Name  Cbr-mct-1
Sequence Name  ? CBG01116 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Is an ortholog of C. elegans mct-1. Biotype  SO:0001217
Genetic Position 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG01116.1 CBG01116.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG01116 CBG01116   [unknown]

0 RNAi Result

37 Allele

Public Name
WBVar00135721
WBVar00135722
WBVar00135723
WBVar00135724
WBVar00135725
WBVar00135726
WBVar00135727
WBVar00135728
WBVar00048759
WBVar00048764
WBVar00048769
WBVar00066811
WBVar00018684
WBVar00066816
WBVar00066821
WBVar00066826
WBVar00066831
WBVar00066836
WBVar00066841
WBVar00066781
WBVar00018654
WBVar00066846
WBVar00066851
WBVar00018659
WBVar00066786
WBVar00066791
WBVar00018664
WBVar00066856
WBVar00066861
WBVar00066796

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG01116, TTTGTTCGATATCAAGGCTTGGGAGGAGAAGAGAAAGGCGGATCGTCTTGGAACCGAAAT, WBGene00024394   Expr1053019 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region